KEGG   PATHWAY: mpah03030
Entry
mpah03030                   Pathway                                
Name
DNA replication - Mus pahari (shrew mouse)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mpah03030  DNA replication
mpah03030

Organism
Mus pahari (shrew mouse) [GN:mpah]
Gene
110312848  Rfc2; replication factor C subunit 2 [KO:K10755]
110312854  Rfc3; replication factor C subunit 3 [KO:K10756]
110312901  Rfc5; replication factor C subunit 5 [KO:K10756]
110313488  Pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
110314858  Mcm2; DNA replication licensing factor MCM2 isoform X1 [KO:K02540] [EC:5.6.2.3]
110316468  Pole4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
110316584  Ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
110316683  [KO:K03111]
110317201  Rpa3; replication protein A 14 kDa subunit [KO:K10740]
110317921  Pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
110318283  Pcna; proliferating cell nuclear antigen isoform X1 [KO:K04802]
110319853  Fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
110321301  Mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
110321456  Mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
110321555  Prim2; DNA primase large subunit [KO:K02685]
110322357  Pola2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
110323429  Pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
110323433  Rpa2; replication protein A 32 kDa subunit [KO:K10739]
110324262  Pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
110324536  Pold4; DNA polymerase delta subunit 4 [KO:K03505]
110324727  Rnaseh1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
110325098  Rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
110326432  Prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
110326528  Pold3; DNA polymerase delta subunit 3 [KO:K03504]
110327132  Dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
110329521  Mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
110330023  Rfc4; LOW QUALITY PROTEIN: replication factor C subunit 4 [KO:K10755]
110330390  Rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
110330937  [KO:K10744]
110330970  Pold2; DNA polymerase delta subunit 2 [KO:K02328]
110332667  Rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
110332966  Rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
110336228  Mcm5; DNA replication licensing factor MCM5 isoform X1 [KO:K02209] [EC:5.6.2.3]
110336646  Lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
110337591  Rnaseh2a; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
110339101  Pole; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
110339113  Mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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