KEGG   PATHWAY: msal00020
Entry
msal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacteroides salmoniphilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msal00020  Citrate cycle (TCA cycle)
msal00020

Module
msal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msal00020]
msal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msal00020]
msal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msal00020]
msal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msal00020]
msal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msal00020]
Other DBs
GO: 0006099
Organism
Mycobacteroides salmoniphilum [GN:msal]
Gene
DSM43276_00765  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DSM43276_00779  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DSM43276_04450  gltA; Citrate synthase [KO:K01659] [EC:2.3.3.5]
DSM43276_02431  acnA; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DSM43276_03483  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DSM43276_01254  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DSM43276_03969  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSM43276_01455  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSM43276_01456  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSM43276_00931  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DSM43276_00930  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSM43276_03473  sdhA_1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSM43276_04277  sdhA_2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSM43276_03474  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DSM43276_04278  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DSM43276_03471  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
DSM43276_03472  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00242]
DSM43276_01111  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
DSM43276_02379  mqo_1; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
DSM43276_02951  mqo_2; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
DSM43276_03060  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
DSM43276_04349  pckG; Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DSM43276_01640  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DSM43276_01737  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msal00010  Glycolysis / Gluconeogenesis
msal00053  Ascorbate and aldarate metabolism
msal00061  Fatty acid biosynthesis
msal00071  Fatty acid degradation
msal00190  Oxidative phosphorylation
msal00220  Arginine biosynthesis
msal00250  Alanine, aspartate and glutamate metabolism
msal00280  Valine, leucine and isoleucine degradation
msal00350  Tyrosine metabolism
msal00470  D-Amino acid metabolism
msal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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