KEGG   PATHWAY: msar00020
Entry
msar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium sarraceniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msar00020  Citrate cycle (TCA cycle)
msar00020

Module
msar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msar00020]
msar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msar00020]
msar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msar00020]
msar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msar00020]
msar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msar00020]
msar_M00982  Methylcitrate cycle [PATH:msar00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium sarraceniae [GN:msar]
Gene
MSAR_02840  gltA1_1; citrate synthase [KO:K01659] [EC:2.3.3.5]
MSAR_04940  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MSAR_04950  [KO:K00242]
MSAR_04960  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSAR_04970  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MSAR_05100  [KO:K00031] [EC:1.1.1.42]
MSAR_05290  gltA1_2; citrate synthase [KO:K01659] [EC:2.3.3.5]
MSAR_05300  pyc_1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MSAR_07710  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MSAR_07720  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MSAR_08560  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MSAR_08600  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MSAR_16400  mqo_1; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MSAR_18400  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MSAR_19110  [KO:K00240] [EC:1.3.5.1]
MSAR_19120  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSAR_22600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MSAR_26850  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MSAR_28480  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MSAR_32260  mqo_2; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MSAR_35210  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MSAR_35670  [KO:K00627] [EC:2.3.1.12]
MSAR_44020  acnA; aconitate hydratase A [KO:K27802]
MSAR_46560  orB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSAR_46570  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSAR_48420  pyc_2; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msar00010  Glycolysis / Gluconeogenesis
msar00053  Ascorbate and aldarate metabolism
msar00061  Fatty acid biosynthesis
msar00071  Fatty acid degradation
msar00190  Oxidative phosphorylation
msar00220  Arginine biosynthesis
msar00250  Alanine, aspartate and glutamate metabolism
msar00280  Valine, leucine and isoleucine degradation
msar00350  Tyrosine metabolism
msar00470  D-Amino acid metabolism
msar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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