KEGG   PATHWAY: mtad00020
Entry
mtad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylobacterium tardum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtad00020  Citrate cycle (TCA cycle)
mtad00020

Module
mtad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtad00020]
mtad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtad00020]
mtad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtad00020]
mtad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtad00020]
mtad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtad00020]
Other DBs
GO: 0006099
Organism
Methylobacterium tardum [GN:mtad]
Gene
M6G65_03595  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M6G65_03600  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M6G65_03605  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M6G65_03610  [KO:K00164] [EC:1.2.4.2]
M6G65_03620  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
M6G65_03630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M6G65_03945  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M6G65_03950  [KO:K00162] [EC:1.2.4.1]
M6G65_03965  [KO:K00627] [EC:2.3.1.12]
M6G65_03975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M6G65_10885  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
M6G65_14025  [KO:K00240] [EC:1.3.5.1]
M6G65_14030  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M6G65_14035  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
M6G65_14040  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M6G65_15105  [KO:K01647] [EC:2.3.3.1]
M6G65_15515  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
M6G65_19135  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
M6G65_19140  [KO:K00627] [EC:2.3.1.12]
M6G65_19145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M6G65_23380  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M6G65_29000  [KO:K00382] [EC:1.8.1.4]
M6G65_29560  acnA; aconitate hydratase AcnA [KO:K27802]
M6G65_32535  [KO:K01610] [EC:4.1.1.49]
M6G65_33055  [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtad00010  Glycolysis / Gluconeogenesis
mtad00053  Ascorbate and aldarate metabolism
mtad00061  Fatty acid biosynthesis
mtad00071  Fatty acid degradation
mtad00190  Oxidative phosphorylation
mtad00220  Arginine biosynthesis
mtad00250  Alanine, aspartate and glutamate metabolism
mtad00280  Valine, leucine and isoleucine degradation
mtad00350  Tyrosine metabolism
mtad00470  D-Amino acid metabolism
mtad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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