KEGG   PATHWAY: mthi00020
Entry
mthi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mixta theicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mthi00020  Citrate cycle (TCA cycle)
mthi00020

Module
mthi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mthi00020]
mthi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mthi00020]
mthi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mthi00020]
mthi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mthi00020]
mthi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mthi00020]
Other DBs
GO: 0006099
Organism
Mixta theicola [GN:mthi]
Gene
C7M52_02181  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
C7M52_01328  acnA; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
C7M52_02643  acnB_1; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7M52_02903  acnB_2; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C7M52_01812  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
C7M52_02176  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C7M52_02175  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
C7M52_02664  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C7M52_02173  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
C7M52_02174  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
C7M52_02178  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C7M52_02177  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C7M52_02180  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
C7M52_02179  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
C7M52_04016  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
C7M52_04015  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
C7M52_04014  frdC; Fumarate reductase subunit C [KO:K00246]
C7M52_04013  frdD; Fumarate reductase subunit D [KO:K00247]
C7M52_01534  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
C7M52_03040  mdh_3; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C7M52_03331  mqo_2; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C7M52_01784  mqo_1; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C7M52_03181  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C7M52_02666  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
C7M52_02665  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mthi00010  Glycolysis / Gluconeogenesis
mthi00053  Ascorbate and aldarate metabolism
mthi00061  Fatty acid biosynthesis
mthi00071  Fatty acid degradation
mthi00190  Oxidative phosphorylation
mthi00220  Arginine biosynthesis
mthi00250  Alanine, aspartate and glutamate metabolism
mthi00280  Valine, leucine and isoleucine degradation
mthi00350  Tyrosine metabolism
mthi00470  D-Amino acid metabolism
mthi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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