KEGG   PATHWAY: npm00630
Entry
npm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Neorhizobium petrolearium
Class
Metabolism; Carbohydrate metabolism
Pathway map
npm00630  Glyoxylate and dicarboxylate metabolism
npm00630

Module
npm_M00012  Glyoxylate cycle [PATH:npm00630]
npm_M00621  Glycine cleavage system [PATH:npm00630]
npm_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:npm00630]
Other DBs
GO: 0046487 0043648
Organism
Neorhizobium petrolearium [GN:npm]
Gene
QEO92_01705  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
QEO92_20515  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
QEO92_23515  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
QEO92_23840  malate synthase G [KO:K01638] [EC:2.3.3.9]
QEO92_21350  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QEO92_08720  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QEO92_09970  citrate synthase [KO:K01647] [EC:2.3.3.1]
QEO92_09980  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
QEO92_14670  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
QEO92_21625  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
QEO92_01045  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
QEO92_21940  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
QEO92_22100  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
QEO92_21935  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
QEO92_06610  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
QEO92_24970  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
QEO92_24955  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
QEO92_24975  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
QEO92_02095  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
QEO92_02100  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
QEO92_02105  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
QEO92_25655  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
QEO92_25895  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
QEO92_00495  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
QEO92_02290  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
QEO92_09230  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
QEO92_10265  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
QEO92_19150  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
QEO92_19145  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
QEO92_01675  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QEO92_01825  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QEO92_04395  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QEO92_09765  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
QEO92_11425  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
QEO92_15600  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
QEO92_05320  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
QEO92_10315  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
QEO92_10305  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
QEO92_08780  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QEO92_16175  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QEO92_21315  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QEO92_10310  gcvH; glycine cleavage system protein GcvH [KO:K02437]
QEO92_27840  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
QEO92_09070  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
QEO92_27845  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
QEO92_29840  glycerate kinase [KO:K11529] [EC:2.7.1.165]
QEO92_27140  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
QEO92_21205  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
QEO92_21215  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
QEO92_22795  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
QEO92_21220  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
QEO92_22790  fdxH; formate dehydrogenase subunit beta [KO:K00124]
QEO92_21225  formate dehydrogenase subunit gamma [KO:K00127]
QEO92_22785  formate dehydrogenase subunit gamma [KO:K00127]
QEO92_23050  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
QEO92_13525  formamidase [KO:K01455] [EC:3.5.1.49]
QEO92_15315  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
npm00010  Glycolysis / Gluconeogenesis
npm00020  Citrate cycle (TCA cycle)
npm00030  Pentose phosphate pathway
npm00053  Ascorbate and aldarate metabolism
npm00071  Fatty acid degradation
npm00230  Purine metabolism
npm00250  Alanine, aspartate and glutamate metabolism
npm00260  Glycine, serine and threonine metabolism
npm00620  Pyruvate metabolism
npm00710  Carbon fixation by Calvin cycle
npm00750  Vitamin B6 metabolism
npm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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