KEGG   PATHWAY: oah00020
Entry
oah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella anthropi OAB
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oah00020  Citrate cycle (TCA cycle)
oah00020

Module
oah_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oah00020]
oah_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oah00020]
oah_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oah00020]
oah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oah00020]
oah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oah00020]
Other DBs
GO: 0006099
Organism
Brucella anthropi OAB [GN:oah]
Gene
DR92_1534  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DR92_1595  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
DR92_1596  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
DR92_142  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
DR92_1484  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DR92_474  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DR92_475  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DR92_1555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DR92_479  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DR92_2932  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DR92_473  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DR92_472  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
DR92_1641  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
DR92_494  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DR92_495  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
DR92_492  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DR92_493  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DR92_1732  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
DR92_3481  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DR92_471  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
DR92_670  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DR92_366  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DR92_2279  transketolase, thiamine diphosphate binding domain protein [KO:K00163] [EC:1.2.4.1]
DR92_1551  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DR92_1552  hypothetical protein [KO:K00162] [EC:1.2.4.1]
DR92_1553  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oah00010  Glycolysis / Gluconeogenesis
oah00053  Ascorbate and aldarate metabolism
oah00061  Fatty acid biosynthesis
oah00071  Fatty acid degradation
oah00190  Oxidative phosphorylation
oah00220  Arginine biosynthesis
oah00250  Alanine, aspartate and glutamate metabolism
oah00280  Valine, leucine and isoleucine degradation
oah00350  Tyrosine metabolism
oah00470  D-Amino acid metabolism
oah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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