KEGG   PATHWAY: oar00020
Entry
oar00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Octadecabacter arcticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oar00020  Citrate cycle (TCA cycle)
oar00020

Module
oar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oar00020]
oar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oar00020]
oar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oar00020]
oar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oar00020]
oar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oar00020]
Other DBs
GO: 0006099
Organism
Octadecabacter arcticus [GN:oar]
Gene
OA238_160p0460  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
OA238_160p0470  [KO:K27802]
OA238_160p1370  [KO:K00163] [EC:1.2.4.1]
OA238_c02270  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
OA238_c04150  lpdA1; dihydrolipoyl dehydrogenase E3 component of2-oxoglutarate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
OA238_c04170  sucB; dihydrolipoyllysine-residue succinyltransferase SucB [KO:K00658] [EC:2.3.1.61]
OA238_c04180  sucA; 2-oxoglutarate dehydrogenase E1 component SucA [KO:K00164] [EC:1.2.4.2]
OA238_c04190  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
OA238_c04200  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
OA238_c04210  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
OA238_c04300  sdhC; succinate dehydrogenase cytochrome b556 subunit SdhC [KO:K00241]
OA238_c04310  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit SdhD [KO:K00242]
OA238_c04320  sdhA; succinate dehydrogenase flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
OA238_c04340  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
OA238_c07690  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
OA238_c10380  acnA; aconitate hydratase AcnA [KO:K27802]
OA238_c11020  pdhC1; dihydrolipoyllysine-residue acetyltransferase PdhC [KO:K00627] [EC:2.3.1.12]
OA238_c11030  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
OA238_c11040  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
OA238_c11670  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
OA238_c12070  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
OA238_c12860  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
OA238_c13870  icd2; isocitrate dehydrogenase2 (NADP) [KO:K00031] [EC:1.1.1.42]
OA238_c32820  icd1; isocitrate dehydrogenase1 (NADP) [KO:K00031] [EC:1.1.1.42]
OA238_c43210  lpdA4; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
OA238_c43220  pdhC2; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oar00010  Glycolysis / Gluconeogenesis
oar00053  Ascorbate and aldarate metabolism
oar00061  Fatty acid biosynthesis
oar00071  Fatty acid degradation
oar00190  Oxidative phosphorylation
oar00220  Arginine biosynthesis
oar00250  Alanine, aspartate and glutamate metabolism
oar00280  Valine, leucine and isoleucine degradation
oar00350  Tyrosine metabolism
oar00470  D-Amino acid metabolism
oar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system