KEGG   PATHWAY: oga00020
Entry
oga00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Otolemur garnettii (small-eared galago)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oga00020  Citrate cycle (TCA cycle)
oga00020

Module
oga_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oga00020]
oga_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oga00020]
oga_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oga00020]
oga_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oga00020]
oga_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oga00020]
Other DBs
GO: 0006099
Organism
Otolemur garnettii (small-eared galago) [GN:oga]
Gene
100941569  CS; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
100941836  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
100942909  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100943275  [KO:K01679] [EC:4.2.1.2]
100943826  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
100944822  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100945295  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100945645  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100947107  [KO:K00030] [EC:1.1.1.41]
100947397  DLD; LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100948069  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100948257  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
100949532  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100950012  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100951019  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
100953360  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X2 [KO:K00161] [EC:1.2.4.1]
100955166  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
100956108  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100956684  ACLY; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
100958844  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100959591  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100960074  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
100960137  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
100960342  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100961812  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100962586  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
100962647  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X2 [KO:K00234] [EC:1.3.5.1]
100963401  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
100963724  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100963755  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
100965253  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
100965354  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oga00010  Glycolysis / Gluconeogenesis
oga00053  Ascorbate and aldarate metabolism
oga00061  Fatty acid biosynthesis
oga00062  Fatty acid elongation
oga00071  Fatty acid degradation
oga00190  Oxidative phosphorylation
oga00220  Arginine biosynthesis
oga00250  Alanine, aspartate and glutamate metabolism
oga00280  Valine, leucine and isoleucine degradation
oga00350  Tyrosine metabolism
oga00470  D-Amino acid metabolism
oga00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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