KEGG   PATHWAY: ola00030
Entry
ola00030                    Pathway                                
Name
Pentose phosphate pathway - Oryzias latipes (Japanese medaka)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ola00030  Pentose phosphate pathway
ola00030

Module
ola_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ola00030]
ola_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ola00030]
ola_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ola00030]
ola_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ola00030]
Other DBs
GO: 0006098
Organism
Oryzias latipes (Japanese medaka) [GN:ola]
Gene
101165966  gpi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
101173933  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
100049251  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
101158357  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
101160908  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
101167199  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
101173937  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
101169891  rpe; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
101162749  transketolase-like [KO:K00615] [EC:2.2.1.1]
101161401  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
101158764  transketolase [KO:K00615] [EC:2.2.1.1]
101163235  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
101166762  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
101168143  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
101175448  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
101162801  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
101175638  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
101175508  phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
101164775  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
101173845  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
101169709  prps1; ribose-phosphate pyrophosphokinase 1 isoform X2 [KO:K00948] [EC:2.7.6.1]
101159881  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
101169116  idnk; probable gluconokinase [KO:K00851] [EC:2.7.1.12]
101170508  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
100049249  aldoa; fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
101163920  fructose-bisphosphate aldolase C isoform X1 [KO:K01623] [EC:4.1.2.13]
100049273  fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
100049250  aldoc; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
101156992  fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
101160795  fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
101161040  fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
101174339  ATP-dependent 6-phosphofructokinase, muscle type [KO:K00850] [EC:2.7.1.11]
101163079  ATP-dependent 6-phosphofructokinase, muscle type [KO:K00850] [EC:2.7.1.11]
101163356  pfkp; ATP-dependent 6-phosphofructokinase, platelet type isoform X3 [KO:K00850] [EC:2.7.1.11]
101169572  pfkl; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
101155970  ATP-dependent 6-phosphofructokinase, platelet type isoform X7 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ola00010  Glycolysis / Gluconeogenesis
ola00040  Pentose and glucuronate interconversions
ola00052  Galactose metabolism
ola00230  Purine metabolism
ola00240  Pyrimidine metabolism
ola00340  Histidine metabolism
ola00630  Glyoxylate and dicarboxylate metabolism
ola00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system