KEGG   PATHWAY: ola00515
Entry
ola00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Oryzias latipes (Japanese medaka)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
ola00515  Mannose type O-glycan biosynthesis
ola00515

Module
ola_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:ola00515]
Other DBs
GO: 0035269
Organism
Oryzias latipes (Japanese medaka) [GN:ola]
Gene
101167160  pomt2; protein O-mannosyl-transferase 2 isoform X1 [KO:K00728] [EC:2.4.1.109]
101157138  pomt1; protein O-mannosyl-transferase 1 isoform X1 [KO:K00728] [EC:2.4.1.109]
101165468  pomgnt1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [KO:K09666] [EC:2.4.1.-]
101171148  b4galt1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
100301598  b4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
101159351  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
101162708  beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
100049527  st3gal3; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [KO:K00781] [EC:2.4.3.6]
100302419  b3gat1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
101158332  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like isoform X1 [KO:K00735] [EC:2.4.1.135]
100302420  b3gat2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 [KO:K10157] [EC:2.4.1.135]
101162582  chst10; carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
100302422  fut9a; alpha3-fucosyltransferase [KO:K03663] [EC:2.4.1.152]
100302423  fut9b; alpha3-fucosyltransferase-like [KO:K03663] [EC:2.4.1.152]
100302424  fut9c; alpha3-fucosyltransferase-like [KO:K03663] [EC:2.4.1.152]
100049384  fut4; alpha3-fucosyltransferase [KO:K07632] [EC:2.4.1.-]
101163172  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K09661] [EC:2.4.1.-]
101173907  mgat5b; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K09661] [EC:2.4.1.-]
101172435  pomgnt2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
101169879  b3galnt2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
101164276  pomk; protein O-mannose kinase isoform X3 [KO:K17547] [EC:2.7.1.183]
101160346  ispd; D-ribitol-5-phosphate cytidylyltransferase [KO:K21031] [EC:2.7.7.40]
101156216  fktn; fukutin isoform X1 [KO:K19872] [EC:2.7.8.-]
101164830  fkrp; fukutin-related protein [KO:K19873] [EC:2.7.8.-]
101158942  rxylt1; UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase isoform X2 [KO:K21052] [EC:2.4.2.61]
101175112  b4gat1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
101160540  LARGE xylosyl- and glucuronyltransferase 2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
101164859  LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
ola00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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