KEGG   PATHWAY: oor00020
Entry
oor00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Orcinus orca (killer whale)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oor00020  Citrate cycle (TCA cycle)
oor00020

Module
oor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oor00020]
oor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:oor00020]
oor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:oor00020]
oor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:oor00020]
oor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oor00020]
Other DBs
GO: 0006099
Organism
Orcinus orca (killer whale) [GN:oor]
Gene
101269185  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X3 [KO:K00164] [EC:1.2.4.2]
101271279  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
101271664  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
101271681  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
101272108  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101273087  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101273381  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
101275401  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
101275408  [KO:K00236]
101275427  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X4 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101275820  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
101277148  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
101277332  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101277363  [KO:K00237]
101278085  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
101278589  [KO:K01679] [EC:4.2.1.2]
101278784  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
101278943  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
101279093  DLD; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
101281921  PC; pyruvate carboxylase, mitochondrial isoform X2 [KO:K01958] [EC:6.4.1.1]
101282163  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
101283096  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
101283790  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
101283861  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
101284360  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
101287547  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101287798  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
101288227  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
101288343  MDH1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
101288463  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
101288495  PDHA2; LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
101290077  ACO2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
101290156  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oor00010  Glycolysis / Gluconeogenesis
oor00053  Ascorbate and aldarate metabolism
oor00061  Fatty acid biosynthesis
oor00062  Fatty acid elongation
oor00071  Fatty acid degradation
oor00190  Oxidative phosphorylation
oor00220  Arginine biosynthesis
oor00250  Alanine, aspartate and glutamate metabolism
oor00280  Valine, leucine and isoleucine degradation
oor00350  Tyrosine metabolism
oor00470  D-Amino acid metabolism
oor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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