KEGG   PATHWAY: aacd00020
Entry
aacd00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Amycolatopsis acidiphila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aacd00020  Citrate cycle (TCA cycle)
aacd00020

Module
aacd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aacd00020]
aacd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aacd00020]
aacd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aacd00020]
aacd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aacd00020]
aacd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aacd00020]
Other DBs
GO: 0006099
Organism
Amycolatopsis acidiphila [GN:aacd]
Gene
LWP59_22360  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
LWP59_32855  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
LWP59_35320  citrate synthase [KO:K01647] [EC:2.3.3.1]
LWP59_35425  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
LWP59_15025  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LWP59_03720  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LWP59_33085  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
LWP59_30815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LWP59_31330  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LWP59_02405  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LWP59_02400  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LWP59_30045  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LWP59_03630  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LWP59_30040  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LWP59_03625  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LWP59_30135  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LWP59_03835  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LWP59_30130  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LWP59_03830  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LWP59_03845  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LWP59_03840  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
LWP59_28975  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LWP59_33530  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LWP59_15725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LWP59_07840  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LWP59_38640  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LWP59_39875  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LWP59_26730  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LWP59_31045  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LWP59_10050  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LWP59_15540  hypothetical protein [KO:K00161] [EC:1.2.4.1]
LWP59_30820  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
LWP59_37115  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
LWP59_16985  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aacd00010  Glycolysis / Gluconeogenesis
aacd00053  Ascorbate and aldarate metabolism
aacd00061  Fatty acid biosynthesis
aacd00071  Fatty acid degradation
aacd00190  Oxidative phosphorylation
aacd00220  Arginine biosynthesis
aacd00250  Alanine, aspartate and glutamate metabolism
aacd00280  Valine, leucine and isoleucine degradation
aacd00350  Tyrosine metabolism
aacd00470  D-Amino acid metabolism
aacd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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