KEGG   PATHWAY: aah00020
Entry
aah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aggregatibacter actinomycetemcomitans HK1651
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aah00020  Citrate cycle (TCA cycle)
aah00020

Module
aah_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aah00020]
aah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aah00020]
aah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aah00020]
Other DBs
GO: 0006099
Organism
Aggregatibacter actinomycetemcomitans HK1651 [GN:aah]
Gene
CF65_02706  2-oxoglutarate dehydrogenase, E1 component,putative' [KO:K00164] [EC:1.2.4.2]
CF65_02704  2-oxoglutarate dehydrogenase, E2 component,dihydrolipoamide succinyltransferase, putative' [KO:K00658] [EC:2.3.1.61]
CF65_01988  dihydrolipoamide dehydrogenase (E3) component ofpyruvate dehydrogenase complex, putative' [KO:K00382] [EC:1.8.1.4]
CF65_02700  succinyl-CoA synthase, alpha subunit, putative [KO:K01902] [EC:6.2.1.5]
CF65_02702  succinyl-CoA synthase, beta subunit, putative [KO:K01903] [EC:6.2.1.5]
CF65_00804  fumarate reductase flavoprotein subunit,putative' [KO:K00244] [EC:1.3.5.1]
CF65_00805  fumarate reductase iron-sulfur protein,putative' [KO:K00245] [EC:1.3.5.1]
CF65_00806  fumarate reductase 15 kDa hydrophobic protein,putative' [KO:K00246]
CF65_00807  fumarate reductase 13 kDa hydrophobic protein,putative' [KO:K00247]
CF65_01717  fumarate hydratase class II, putative [KO:K01679] [EC:4.2.1.2]
CF65_01801  malate dehydrogenase, putative [KO:K00024] [EC:1.1.1.37]
CF65_00964  phosphoenolpyruvate carboxykinase (ATP),putative' [KO:K01610] [EC:4.1.1.49]
CF65_01985  pyruvate dehydrogenase (E1) component ofpyruvate dehydrogenase complex, putative' [KO:K00163] [EC:1.2.4.1]
CF65_01986  dihydrolipoamide acetyltransferase (E2)component of pyruvate dehydrogenase complex, putative' [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aah00010  Glycolysis / Gluconeogenesis
aah00053  Ascorbate and aldarate metabolism
aah00061  Fatty acid biosynthesis
aah00071  Fatty acid degradation
aah00190  Oxidative phosphorylation
aah00220  Arginine biosynthesis
aah00250  Alanine, aspartate and glutamate metabolism
aah00280  Valine, leucine and isoleucine degradation
aah00350  Tyrosine metabolism
aah00470  D-Amino acid metabolism
aah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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