KEGG   PATHWAY: aaj00020
Entry
aaj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas hydrophila MX16A
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aaj00020  Citrate cycle (TCA cycle)
aaj00020

Module
aaj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aaj00020]
aaj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aaj00020]
aaj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aaj00020]
aaj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aaj00020]
aaj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aaj00020]
Other DBs
GO: 0006099
Organism
Aeromonas hydrophila MX16A [GN:aaj]
Gene
BOQ57_09690  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BOQ57_20125  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BOQ57_07010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BOQ57_05585  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
BOQ57_09715  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BOQ57_09720  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BOQ57_20150  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BOQ57_09730  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BOQ57_09725  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BOQ57_09705  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BOQ57_09710  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BOQ57_09695  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BOQ57_09700  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BOQ57_16445  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BOQ57_16450  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BOQ57_16455  fumarate reductase subunit C [KO:K00246]
BOQ57_16460  fumarate reductase subunit D [KO:K00247]
BOQ57_10100  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BOQ57_16865  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BOQ57_03220  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BOQ57_02735  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BOQ57_20160  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BOQ57_20155  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BOQ57_07235  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
BOQ57_16275  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aaj00010  Glycolysis / Gluconeogenesis
aaj00053  Ascorbate and aldarate metabolism
aaj00061  Fatty acid biosynthesis
aaj00071  Fatty acid degradation
aaj00190  Oxidative phosphorylation
aaj00220  Arginine biosynthesis
aaj00250  Alanine, aspartate and glutamate metabolism
aaj00280  Valine, leucine and isoleucine degradation
aaj00350  Tyrosine metabolism
aaj00470  D-Amino acid metabolism
aaj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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