KEGG   PATHWAY: aaqu00020
Entry
aaqu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alcaligenes aquatilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aaqu00020  Citrate cycle (TCA cycle)
aaqu00020

Module
aaqu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aaqu00020]
aaqu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aaqu00020]
aaqu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aaqu00020]
aaqu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aaqu00020]
Other DBs
GO: 0006099
Organism
Alcaligenes aquatilis [GN:aaqu]
Gene
D3M96_06480  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
D3M96_08240  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
D3M96_18610  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
D3M96_06405  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
D3M96_14560  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D3M96_06500  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D3M96_06505  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D3M96_06510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D3M96_11140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D3M96_11195  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D3M96_11800  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D3M96_11805  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D3M96_15620  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
D3M96_06465  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D3M96_06470  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D3M96_06455  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
D3M96_06460  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
D3M96_04905  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
D3M96_10680  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D3M96_06445  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D3M96_11150  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
D3M96_11145  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aaqu00010  Glycolysis / Gluconeogenesis
aaqu00061  Fatty acid biosynthesis
aaqu00071  Fatty acid degradation
aaqu00190  Oxidative phosphorylation
aaqu00220  Arginine biosynthesis
aaqu00250  Alanine, aspartate and glutamate metabolism
aaqu00280  Valine, leucine and isoleucine degradation
aaqu00350  Tyrosine metabolism
aaqu00470  D-Amino acid metabolism
aaqu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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