KEGG   PATHWAY: abac00020
Entry
abac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Luteitalea pratensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abac00020  Citrate cycle (TCA cycle)
abac00020

Module
abac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abac00020]
abac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abac00020]
abac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abac00020]
abac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abac00020]
Other DBs
GO: 0006099
Organism
Luteitalea pratensis [GN:abac]
Gene
LuPra_05874  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
LuPra_03045  aarA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
LuPra_04632  acn; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LuPra_04163  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LuPra_05591  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
LuPra_03576  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LuPra_03577  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LuPra_06037  lpdG; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LuPra_04691  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LuPra_04156  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LuPra_04155  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LuPra_04157  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LuPra_04158  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
LuPra_04160  frdA_2; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LuPra_00634  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LuPra_04161  frdB_3; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LuPra_00635  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LuPra_04159  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
LuPra_03968  frdA_1; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
LuPra_03969  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
LuPra_03970  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
LuPra_03971  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
LuPra_05451  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LuPra_04162  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LuPra_06031  mdh_3; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LuPra_05206  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
LuPra_02046  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
LuPra_04693  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LuPra_04692  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
LuPra_06036  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
LuPra_04111  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abac00010  Glycolysis / Gluconeogenesis
abac00053  Ascorbate and aldarate metabolism
abac00061  Fatty acid biosynthesis
abac00071  Fatty acid degradation
abac00190  Oxidative phosphorylation
abac00220  Arginine biosynthesis
abac00250  Alanine, aspartate and glutamate metabolism
abac00280  Valine, leucine and isoleucine degradation
abac00350  Tyrosine metabolism
abac00470  D-Amino acid metabolism
abac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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