KEGG   PATHWAY: abh00020
Entry
abh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter baumannii TYTH-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abh00020  Citrate cycle (TCA cycle)
abh00020

Module
abh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abh00020]
abh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abh00020]
abh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abh00020]
abh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abh00020]
abh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abh00020]
Other DBs
GO: 0006099
Organism
Acinetobacter baumannii TYTH-1 [GN:abh]
Gene
M3Q_3193  citrate synthase [KO:K01647] [EC:2.3.3.1]
M3Q_806  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
M3Q_2577  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M3Q_2989  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M3Q_2991  monomeric isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M3Q_3188  sucA [KO:K00164] [EC:1.2.4.2]
M3Q_3187  sucB [KO:K00658] [EC:2.3.1.61]
M3Q_3314  sucB [KO:K00658] [EC:2.3.1.61]
M3Q_2089  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M3Q_3186  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M3Q_3418  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
M3Q_3313  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M3Q_3184  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
M3Q_3311  sucD [KO:K01902] [EC:6.2.1.5]
M3Q_3185  sucC [KO:K01903] [EC:6.2.1.5]
M3Q_3312  sucC [KO:K01903] [EC:6.2.1.5]
M3Q_3664  acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
M3Q_3190  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M3Q_3189  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M3Q_3192  sdhC [KO:K00241]
M3Q_3191  sdhD [KO:K00242]
M3Q_736  hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01676] [EC:4.2.1.2]
M3Q_2457  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M3Q_3453  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M3Q_1224  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
M3Q_3144  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
M3Q_64  aceE [KO:K00163] [EC:1.2.4.1]
M3Q_2088  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
M3Q_63  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abh00010  Glycolysis / Gluconeogenesis
abh00053  Ascorbate and aldarate metabolism
abh00061  Fatty acid biosynthesis
abh00071  Fatty acid degradation
abh00190  Oxidative phosphorylation
abh00220  Arginine biosynthesis
abh00250  Alanine, aspartate and glutamate metabolism
abh00280  Valine, leucine and isoleucine degradation
abh00350  Tyrosine metabolism
abh00470  D-Amino acid metabolism
abh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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