KEGG   PATHWAY: abs00020
Entry
abs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azospirillum baldaniorum Sp245
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abs00020  Citrate cycle (TCA cycle)
abs00020

Module
abs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abs00020]
abs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abs00020]
abs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abs00020]
abs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abs00020]
abs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abs00020]
Other DBs
GO: 0006099
Organism
Azospirillum baldaniorum Sp245 [GN:abs]
Gene
AZOBR_p280099  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AZOBR_100294  citrate synthase (fragment) [KO:K01647] [EC:2.3.3.1]
AZOBR_100295  protein of unknown function [KO:K01647] [EC:2.3.3.1]
AZOBR_40067  acnA; aconitase [KO:K01681] [EC:4.2.1.3]
AZOBR_p150017  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AZOBR_150150  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AZOBR_150156  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AZOBR_200166  sucA; 2-oxoglutarate dehydrogenase complex,thiamin-binding component (E1) [KO:K00164] [EC:1.2.4.2]
AZOBR_p410031  putative Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
AZOBR_200167  sucB; 2-oxoglutarate dehydrogenase complex,Dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
AZOBR_40292  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AZOBR_p110002  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AZOBR_10525  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AZOBR_10524  korB; 2-oxoglutarate ferredoxin-oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AZOBR_p480047  sucD; succinyl-CoA synthetase, alpha subunit,NAD(P)-binding [KO:K01902] [EC:6.2.1.5]
AZOBR_200164  sucD; succinyl-CoA synthetase, alpha subunit,NAD(P)-binding [KO:K01902] [EC:6.2.1.5]
AZOBR_p480046  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AZOBR_200163  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AZOBR_p250005  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AZOBR_200133  sdhB; succinate dehydrogenase, Fe-S subunit [KO:K00240] [EC:1.3.5.1]
AZOBR_200137  sdhC; succinate dehydrogenase, cytochrome b subunit [KO:K00241]
AZOBR_200136  sdhD; succinate dehydrogenase, hydrophobic membrane anchor subunit [KO:K00242]
AZOBR_140310  fumA; fumarase A (fumarate hydratase class I) [KO:K01676] [EC:4.2.1.2]
AZOBR_100009  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AZOBR_200162  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AZOBR_p430062  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AZOBR_p230043  putative transketolase (fragment) [KO:K00163] [EC:1.2.4.1]
AZOBR_p1180036  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
AZOBR_p1180037  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
AZOBR_50036  acoC; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
AZOBR_p310092  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (fragment) [KO:K00627] [EC:2.3.1.12]
AZOBR_p110001  pyruvate dehydrogenase, dihydrolipoamide acetyltransferase (E2) component (fragment) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abs00010  Glycolysis / Gluconeogenesis
abs00053  Ascorbate and aldarate metabolism
abs00061  Fatty acid biosynthesis
abs00071  Fatty acid degradation
abs00190  Oxidative phosphorylation
abs00220  Arginine biosynthesis
abs00250  Alanine, aspartate and glutamate metabolism
abs00280  Valine, leucine and isoleucine degradation
abs00350  Tyrosine metabolism
abs00470  D-Amino acid metabolism
abs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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