KEGG   PATHWAY: acav00020
Entry
acav00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas caviae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acav00020  Citrate cycle (TCA cycle)
acav00020

Module
acav_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acav00020]
acav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acav00020]
acav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acav00020]
Other DBs
GO: 0006099
Organism
Aeromonas caviae [GN:acav]
Gene
VI35_09435  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
VI35_02395  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VI35_15655  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
VI35_09460  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
VI35_09465  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
VI35_02370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VI35_09475  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
VI35_09450  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VI35_09440  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
VI35_09445  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
VI35_05295  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
VI35_05290  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
VI35_05285  fumarate reductase subunit C [KO:K00246]
VI35_05280  fumarate reductase subunit D [KO:K00247]
VI35_16225  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
VI35_17990  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VI35_02815  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
VI35_02360  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
VI35_02365  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
VI35_05465  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acav00010  Glycolysis / Gluconeogenesis
acav00053  Ascorbate and aldarate metabolism
acav00061  Fatty acid biosynthesis
acav00071  Fatty acid degradation
acav00190  Oxidative phosphorylation
acav00220  Arginine biosynthesis
acav00250  Alanine, aspartate and glutamate metabolism
acav00280  Valine, leucine and isoleucine degradation
acav00350  Tyrosine metabolism
acav00470  D-Amino acid metabolism
acav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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