KEGG   PATHWAY: acb00020
Entry
acb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter baumannii ATCC 17978
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acb00020  Citrate cycle (TCA cycle)
acb00020

Module
acb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acb00020]
acb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acb00020]
acb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acb00020]
acb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acb00020]
acb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acb00020]
Other DBs
GO: 0006099
Organism
Acinetobacter baumannii ATCC 17978 [GN:acb]
Gene
A1S_2710  hypothetical protein [KO:K01647] [EC:2.3.3.1]
A1S_0558  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A1S_2126  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A1S_2127  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A1S_2477  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A1S_2475  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A1S_2715  2-oxoglutarate decarboxylase component of the 2-oxoglutarate dehydrogenase complex (E1) [KO:K00164] [EC:1.2.4.2]
A1S_2716  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) [KO:K00658] [EC:2.3.1.61]
A1S_2717  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1S_1702  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A1S_2952  putative pyridine nucleotide-disulfide oxidoreductase class I [KO:K00382] [EC:1.8.1.4]
A1S_2719  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
A1S_2718  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
A1S_3231  putative acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
A1S_2713  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A1S_2714  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A1S_2711  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
A1S_2712  succinate dehydrogenase hydrophobic subunit [KO:K00242]
A1S_0480  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A1S_1986  fumarase C [KO:K01679] [EC:4.2.1.2]
A1S_3025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A1S_0923  malate dehydrogenase FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
A1S_2668  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
A1S_3328  pyruvate decarboxylase E1 component of the pyruvate dehydrogenase complex [KO:K00163] [EC:1.2.4.1]
A1S_3327  dihydrolipoamide S-acetyltransferase E2 component of the pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
A1S_1701  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acb00010  Glycolysis / Gluconeogenesis
acb00053  Ascorbate and aldarate metabolism
acb00061  Fatty acid biosynthesis
acb00071  Fatty acid degradation
acb00190  Oxidative phosphorylation
acb00220  Arginine biosynthesis
acb00250  Alanine, aspartate and glutamate metabolism
acb00280  Valine, leucine and isoleucine degradation
acb00350  Tyrosine metabolism
acb00470  D-Amino acid metabolism
acb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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