KEGG   PATHWAY: acio00020
Entry
acio00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acidovorax sp. 1608163
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acio00020  Citrate cycle (TCA cycle)
acio00020

Module
acio_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acio00020]
acio_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acio00020]
acio_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acio00020]
acio_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acio00020]
acio_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acio00020]
Other DBs
GO: 0006099
Organism
Acidovorax sp. 1608163 [GN:acio]
Gene
EAG14_12305  citrate synthase [KO:K01647] [EC:2.3.3.1]
EAG14_13735  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EAG14_12255  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EAG14_21135  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EAG14_09490  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EAG14_11240  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EAG14_11235  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EAG14_11230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EAG14_10650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EAG14_22445  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EAG14_22440  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EAG14_21335  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
EAG14_12295  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EAG14_12280  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EAG14_12285  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EAG14_07800  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EAG14_07805  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EAG14_12270  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EAG14_21175  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EAG14_10660  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EAG14_11920  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EAG14_10655  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acio00010  Glycolysis / Gluconeogenesis
acio00053  Ascorbate and aldarate metabolism
acio00061  Fatty acid biosynthesis
acio00071  Fatty acid degradation
acio00190  Oxidative phosphorylation
acio00220  Arginine biosynthesis
acio00250  Alanine, aspartate and glutamate metabolism
acio00280  Valine, leucine and isoleucine degradation
acio00350  Tyrosine metabolism
acio00470  D-Amino acid metabolism
acio00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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