KEGG   PATHWAY: acp00020
Entry
acp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anaeromyxobacter dehalogenans 2CP-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acp00020  Citrate cycle (TCA cycle)
acp00020

Module
acp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acp00020]
acp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acp00020]
acp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acp00020]
acp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acp00020]
Other DBs
GO: 0006099
Organism
Anaeromyxobacter dehalogenans 2CP-1 [GN:acp]
Gene
A2cp1_3811  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A2cp1_3806  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A2cp1_1341  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A2cp1_1721  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
A2cp1_2323  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
A2cp1_0833  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
A2cp1_0834  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A2cp1_2108  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A2cp1_2001  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A2cp1_2004  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A2cp1_3213  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A2cp1_2002  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A2cp1_2005  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A2cp1_3212  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A2cp1_2006  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
A2cp1_2003  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
A2cp1_2320  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
A2cp1_2321  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
A2cp1_2668  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
A2cp1_2818  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A2cp1_3126  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A2cp1_2819  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A2cp1_3125  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00240] [EC:1.3.5.1]
A2cp1_2817  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
A2cp1_3127  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
A2cp1_1888  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
A2cp1_0286  Fe-S type hydro-lyase tartrate/fumarate beta region [KO:K01678] [EC:4.2.1.2]
A2cp1_1346  fumarate lyase [KO:K01679] [EC:4.2.1.2]
A2cp1_2322  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
A2cp1_1722  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
A2cp1_3215  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A2cp1_3817  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
A2cp1_1827  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
A2cp1_1517  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
A2cp1_2103  3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [KO:K00161] [EC:1.2.4.1]
A2cp1_2104  Transketolase central region [KO:K00162] [EC:1.2.4.1]
A2cp1_1826  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
A2cp1_2105  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
A2cp1_0241  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acp00010  Glycolysis / Gluconeogenesis
acp00053  Ascorbate and aldarate metabolism
acp00061  Fatty acid biosynthesis
acp00071  Fatty acid degradation
acp00190  Oxidative phosphorylation
acp00220  Arginine biosynthesis
acp00250  Alanine, aspartate and glutamate metabolism
acp00280  Valine, leucine and isoleucine degradation
acp00350  Tyrosine metabolism
acp00470  D-Amino acid metabolism
acp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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