KEGG   PATHWAY: acro00020
Entry
acro00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aliiroseovarius crassostreae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acro00020  Citrate cycle (TCA cycle)
acro00020

Module
acro_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acro00020]
acro_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acro00020]
acro_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acro00020]
acro_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acro00020]
acro_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acro00020]
Other DBs
GO: 0006099
Organism
Aliiroseovarius crassostreae [GN:acro]
Gene
K3J57_00100  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
K3J57_09015  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
K3J57_15880  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K3J57_13740  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K3J57_13735  hypothetical protein [KO:K00030] [EC:1.1.1.41]
K3J57_02830  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K3J57_02835  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K3J57_02845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K3J57_07580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K3J57_02825  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K3J57_02820  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K3J57_02770  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K3J57_02765  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K3J57_02780  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K3J57_02775  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K3J57_07945  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K3J57_02810  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K3J57_09650  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
K3J57_01070  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K3J57_14425  transketolase [KO:K00163] [EC:1.2.4.1]
K3J57_05225  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K3J57_05220  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
K3J57_05215  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acro00010  Glycolysis / Gluconeogenesis
acro00053  Ascorbate and aldarate metabolism
acro00061  Fatty acid biosynthesis
acro00071  Fatty acid degradation
acro00190  Oxidative phosphorylation
acro00220  Arginine biosynthesis
acro00250  Alanine, aspartate and glutamate metabolism
acro00280  Valine, leucine and isoleucine degradation
acro00350  Tyrosine metabolism
acro00470  D-Amino acid metabolism
acro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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