KEGG   PATHWAY: acw00020
Entry
acw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter sp. DUT-2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acw00020  Citrate cycle (TCA cycle)
acw00020

Module
acw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acw00020]
acw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acw00020]
acw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acw00020]
Other DBs
GO: 0006099
Organism
Acinetobacter sp. DUT-2 [GN:acw]
Gene
A0J50_06485  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A0J50_04805  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A0J50_04815  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A0J50_03795  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A0J50_03800  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A0J50_03805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0J50_09030  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0J50_02540  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0J50_03815  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A0J50_03810  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A0J50_01225  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
A0J50_03780  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A0J50_03785  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A0J50_03770  succinate dehydrogenase [KO:K00241]
A0J50_03775  succinate dehydrogenase [KO:K00242]
A0J50_15070  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A0J50_07215  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A0J50_02290  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A0J50_12820  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A0J50_03995  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
A0J50_00715  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A0J50_00720  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acw00010  Glycolysis / Gluconeogenesis
acw00053  Ascorbate and aldarate metabolism
acw00061  Fatty acid biosynthesis
acw00071  Fatty acid degradation
acw00190  Oxidative phosphorylation
acw00220  Arginine biosynthesis
acw00250  Alanine, aspartate and glutamate metabolism
acw00280  Valine, leucine and isoleucine degradation
acw00350  Tyrosine metabolism
acw00470  D-Amino acid metabolism
acw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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