KEGG   PATHWAY: acx00020
Entry
acx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azotobacter chroococcum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acx00020  Citrate cycle (TCA cycle)
acx00020

Module
acx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acx00020]
acx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acx00020]
acx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acx00020]
acx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acx00020]
acx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acx00020]
Other DBs
GO: 0006099
Organism
Azotobacter chroococcum [GN:acx]
Gene
Achr_18030  gltA; Type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Achr_24870  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Achr_2760  acnB; Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Achr_23090  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Achr_19440  icd; isocitrate dehydrogenase, NADP-dependent, Icd [KO:K00031] [EC:1.1.1.42]
Achr_18090  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Achr_18100  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Achr_18110  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Achr_18130  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Achr_18120  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Achr_26350  Acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
Achr_26360  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
Achr_14490  Acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
Achr_18060  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Achr_18070  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Achr_18040  sdhC; succinate dehydrogenase subunit C [KO:K00241]
Achr_18050  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
Achr_11840  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
Achr_13580  fumC2; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Achr_f210  mdh; lactate/malate dehydrogenase, NAD binding domain [KO:K00024] [EC:1.1.1.37]
Achr_9140  mqo2; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Achr_37720  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Achr_2030  pycA; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
Achr_2040  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
Achr_35610  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Achr_6870  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Achr_5310  pdhA; Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Achr_5320  pdhB; Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
Achr_6860  aceF; Pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Achr_5330  pdhC; Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
Achr_8730  acoC; Branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acx00010  Glycolysis / Gluconeogenesis
acx00053  Ascorbate and aldarate metabolism
acx00061  Fatty acid biosynthesis
acx00071  Fatty acid degradation
acx00190  Oxidative phosphorylation
acx00220  Arginine biosynthesis
acx00250  Alanine, aspartate and glutamate metabolism
acx00280  Valine, leucine and isoleucine degradation
acx00350  Tyrosine metabolism
acx00470  D-Amino acid metabolism
acx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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