KEGG   PATHWAY: ady00630
Entry
ady00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Achromobacter deleyi
Class
Metabolism; Carbohydrate metabolism
Pathway map
ady00630  Glyoxylate and dicarboxylate metabolism
ady00630

Module
ady_M00012  Glyoxylate cycle [PATH:ady00630]
ady_M00621  Glycine cleavage system [PATH:ady00630]
Other DBs
GO: 0046487 0043648
Organism
Achromobacter deleyi [GN:ady]
Gene
HLG70_02290  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
HLG70_25145  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
HLG70_11535  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
HLG70_14800  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
HLG70_14985  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HLG70_22330  malate synthase G [KO:K01638] [EC:2.3.3.9]
HLG70_14750  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HLG70_20975  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
HLG70_23830  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
HLG70_14715  citrate synthase [KO:K01647] [EC:2.3.3.1]
HLG70_14760  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
HLG70_26550  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HLG70_27300  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HLG70_01955  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HLG70_02000  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HLG70_21245  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HLG70_01740  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HLG70_02055  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
HLG70_04865  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HLG70_11595  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
HLG70_25630  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HLG70_14565  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HLG70_15930  SDR family oxidoreductase [KO:K00023] [EC:1.1.1.36]
HLG70_13530  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
HLG70_13525  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
HLG70_13520  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
HLG70_21290  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
HLG70_21670  catalase [KO:K03781] [EC:1.11.1.6]
HLG70_09180  catalase [KO:K03781] [EC:1.11.1.6]
HLG70_18145  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
HLG70_21525  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
HLG70_24445  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
HLG70_19975  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
HLG70_23400  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
HLG70_15200  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
HLG70_05240  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HLG70_21860  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
HLG70_18735  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HLG70_24995  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HLG70_25780  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
HLG70_25770  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
HLG70_23995  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLG70_05890  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLG70_10425  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLG70_10760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLG70_14650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLG70_25775  gcvH; glycine cleavage system protein GcvH [KO:K02437]
HLG70_26900  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
HLG70_17510  glycerate kinase [KO:K00865] [EC:2.7.1.165]
HLG70_26865  fumarate hydratase [KO:K03779] [EC:4.2.1.32]
HLG70_26870  fumarate hydratase C-terminal domain-containing protein [KO:K03780] [EC:4.2.1.32]
HLG70_26965  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HLG70_27720  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HLG70_12890  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HLG70_17155  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HLG70_27900  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
HLG70_20080  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
HLG70_27910  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HLG70_20075  fdxH; formate dehydrogenase subunit beta [KO:K00124]
HLG70_27915  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
HLG70_20070  formate dehydrogenase subunit gamma [KO:K00127]
HLG70_27920  formate dehydrogenase subunit gamma [KO:K00127]
HLG70_19225  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
HLG70_14145  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
HLG70_17245  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
HLG70_02865  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
HLG70_11130  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ady00010  Glycolysis / Gluconeogenesis
ady00020  Citrate cycle (TCA cycle)
ady00030  Pentose phosphate pathway
ady00053  Ascorbate and aldarate metabolism
ady00071  Fatty acid degradation
ady00230  Purine metabolism
ady00250  Alanine, aspartate and glutamate metabolism
ady00260  Glycine, serine and threonine metabolism
ady00620  Pyruvate metabolism
ady00710  Carbon fixation by Calvin cycle
ady00750  Vitamin B6 metabolism
ady00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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