KEGG   PATHWAY: aea03430
Entry
aea03430                    Pathway                                
Name
Mismatch repair - Aeromonas sp. ASNIH3
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
aea03430  Mismatch repair
aea03430

Other DBs
GO: 0006298
Organism
Aeromonas sp. ASNIH3 [GN:aea]
Gene
C2U39_19715  mutS; DNA mismatch repair protein MutS [KO:K03555]
C2U39_17855  DNA mismatch repair endonuclease MutL [KO:K03572]
C2U39_19225  DNA mismatch repair endonuclease MutH [KO:K03573]
C2U39_00090  DNA helicase II [KO:K03657] [EC:5.6.2.4]
C2U39_09250  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
C2U39_09640  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
C2U39_05265  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
C2U39_05435  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
C2U39_23625  single-stranded DNA-binding protein [KO:K03111]
C2U39_02035  single-stranded DNA-binding protein [KO:K03111]
C2U39_15365  single-stranded DNA-binding protein [KO:K03111]
C2U39_16510  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
C2U39_22235  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
C2U39_10680  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
C2U39_05520  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
C2U39_10955  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
C2U39_09860  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
C2U39_18685  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
C2U39_07380  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
C2U39_22870  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
C2U39_24010  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
C2U39_19625  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
C2U39_18365  hypothetical protein [KO:K02344] [EC:2.7.7.7]
C2U39_16345  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
C2U39_05855  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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