KEGG   PATHWAY: afw00020
Entry
afw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anaeromyxobacter sp. Fw109-5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afw00020  Citrate cycle (TCA cycle)
afw00020

Module
afw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afw00020]
afw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afw00020]
afw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afw00020]
afw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afw00020]
Other DBs
GO: 0006099
Organism
Anaeromyxobacter sp. Fw109-5 [GN:afw]
Gene
Anae109_3798  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Anae109_3793  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Anae109_1252  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Anae109_2186  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Anae109_1588  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Anae109_0829  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Anae109_0830  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Anae109_1998  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Anae109_1891  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Anae109_1894  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Anae109_2994  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Anae109_2993  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Anae109_1895  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Anae109_1892  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Anae109_1896  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
Anae109_1893  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Anae109_2183  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Anae109_3723  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Anae109_2184  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Anae109_3724  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Anae109_2477  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Anae109_2603  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Anae109_2604  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Anae109_2602  succinate dehydrogenase or fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Anae109_3051  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Anae109_1258  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Anae109_2185  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Anae109_1589  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Anae109_2995  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Anae109_3803  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Anae109_4128  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Anae109_1993  3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [KO:K00161] [EC:1.2.4.1]
Anae109_1994  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Anae109_4127  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Anae109_1995  dehydrogenase complex catalytic domain [KO:K00627] [EC:2.3.1.12]
Anae109_0236  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afw00010  Glycolysis / Gluconeogenesis
afw00053  Ascorbate and aldarate metabolism
afw00061  Fatty acid biosynthesis
afw00071  Fatty acid degradation
afw00190  Oxidative phosphorylation
afw00220  Arginine biosynthesis
afw00250  Alanine, aspartate and glutamate metabolism
afw00280  Valine, leucine and isoleucine degradation
afw00350  Tyrosine metabolism
afw00470  D-Amino acid metabolism
afw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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