KEGG   PATHWAY: afy00020
Entry
afy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acidihalobacter ferrooxydans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afy00020  Citrate cycle (TCA cycle)
afy00020

Module
afy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afy00020]
afy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afy00020]
afy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afy00020]
afy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afy00020]
Other DBs
GO: 0006099
Organism
Acidihalobacter ferrooxydans [GN:afy]
Gene
BW247_11295  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BW247_11635  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BW247_11615  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BW247_15630  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BW247_15635  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BW247_12480  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BW247_13200  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BW247_14855  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BW247_15640  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BW247_04555  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BW247_13335  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BW247_13340  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BW247_05835  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BW247_05840  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BW247_05825  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BW247_05830  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BW247_03910  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BW247_11745  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BW247_14840  hypothetical protein [KO:K00024] [EC:1.1.1.37]
BW247_05755  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
BW247_05750  oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
BW247_12490  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BW247_04535  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BW247_04530  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BW247_12485  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BW247_04525  dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afy00010  Glycolysis / Gluconeogenesis
afy00053  Ascorbate and aldarate metabolism
afy00061  Fatty acid biosynthesis
afy00071  Fatty acid degradation
afy00190  Oxidative phosphorylation
afy00220  Arginine biosynthesis
afy00250  Alanine, aspartate and glutamate metabolism
afy00280  Valine, leucine and isoleucine degradation
afy00350  Tyrosine metabolism
afy00470  D-Amino acid metabolism
afy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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