KEGG   PATHWAY: agc00240
Entry
agc00240                    Pathway                                
Name
Pyrimidine metabolism - Agrobacterium sp. RAC06
Class
Metabolism; Nucleotide metabolism
Pathway map
agc00240  Pyrimidine metabolism
agc00240

Module
agc_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:agc00240]
agc_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:agc00240]
Other DBs
GO: 0006220 0006213
Organism
Agrobacterium sp. RAC06 [GN:agc]
Gene
BSY240_4417  carB; carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
BSY240_4429  carA; carbamoyl-phosphate synthase, small subunit [KO:K01956] [EC:6.3.5.5]
BSY240_1060  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
BSY240_1061  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
BSY240_2362  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
BSY240_3282  hypothetical protein [KO:K01465] [EC:3.5.2.3]
BSY240_2323  pyrD; dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
BSY240_2360  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
BSY240_2481  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
BSY240_750  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
BSY240_1210  nucleoside diphosphate kinase family protein [KO:K00940] [EC:2.7.4.6]
BSY240_669  MazG family protein [KO:K04765] [EC:3.6.1.9]
BSY240_2288  maf; septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
BSY240_2867  maf-like family protein [KO:K06287] [EC:3.6.1.-]
BSY240_708  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
BSY240_2711  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
BSY240_3981  calcineurin-like phosphoesterase family protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
BSY240_867  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
BSY240_2626  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
BSY240_909  hypothetical protein [KO:K01119] [EC:3.1.4.16 3.1.3.6]
BSY240_4035  ymdB-like family protein [KO:K09769] [EC:3.1.4.16]
BSY240_372  indigoidine synthase A like family protein [KO:K16329] [EC:4.2.1.70]
BSY240_2621  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
BSY240_4461  amidohydrolase family protein [KO:K01485] [EC:3.5.4.1 3.5.4.21]
BSY240_16  amidohydrolase family protein [KO:K01485] [EC:3.5.4.1 3.5.4.21]
BSY240_3358  amidohydrolase family protein [KO:K01485] [EC:3.5.4.1 3.5.4.21]
BSY240_2335  2'-deoxycytidine 5'-triphosphate deaminase family protein [KO:K01494] [EC:3.5.4.13]
BSY240_935  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [KO:K00525] [EC:1.17.4.1]
BSY240_1279  hypothetical protein [KO:K06952] [EC:3.1.3.89]
BSY240_632  tmk; dTMP kinase [KO:K00943] [EC:2.7.4.9]
BSY240_2462  dut; dUTP diphosphatase family protein [KO:K01520] [EC:3.6.1.23]
BSY240_2624  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
BSY240_240  thymidine kinase family protein [KO:K00857] [EC:2.7.1.21]
BSY240_250  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
BSY240_4174  NAD binding domain of 6-phosphogluconate dehydrogenase family protein [KO:K17722] [EC:1.3.1.1]
BSY240_4173  dihydroorotate dehydrogenase family domain protein [KO:K17723] [EC:1.3.1.1]
BSY240_4167  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
BSY240_2604  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
BSY240_71  amidase, hydantoinase/carbamoylase family protein [KO:K06016] [EC:3.5.1.6 3.5.1.87]
BSY240_4168  amidase, hydantoinase/carbamoylase family protein [KO:K06016] [EC:3.5.1.6 3.5.1.87]
BSY240_839  rutA; pyrimidine utilization protein A [KO:K09018] [EC:1.14.99.46]
BSY240_843  flavin reductase like domain protein [KO:K09024] [EC:1.5.1.-]
BSY240_3470  flavin reductase like domain protein [KO:K09024] [EC:1.5.1.-]
BSY240_840  rutB; pyrimidine utilization protein B [KO:K09020] [EC:3.5.1.110]
BSY240_841  rutC; pyrimidine utilization protein C [KO:K09021]
BSY240_842  rutD; pyrimidine utilization protein D [KO:K09023] [EC:3.5.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
agc00030  Pentose phosphate pathway
agc00220  Arginine biosynthesis
agc00250  Alanine, aspartate and glutamate metabolism
agc00280  Valine, leucine and isoleucine degradation
agc00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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