KEGG   PATHWAY: agt00630
Entry
agt00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Agrobacterium sp. 33MFTa1.1
Class
Metabolism; Carbohydrate metabolism
Pathway map
agt00630  Glyoxylate and dicarboxylate metabolism
agt00630

Module
agt_M00012  Glyoxylate cycle [PATH:agt00630]
agt_M00621  Glycine cleavage system [PATH:agt00630]
agt_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:agt00630]
Other DBs
GO: 0046487 0043648
Organism
Agrobacterium sp. 33MFTa1.1 [GN:agt]
Gene
EYD00_01265  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
EYD00_11810  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EYD00_12500  malate synthase G [KO:K01638] [EC:2.3.3.9]
EYD00_11275  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EYD00_05175  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EYD00_11510  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EYD00_14090  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EYD00_00680  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EYD00_10730  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
EYD00_11930  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EYD00_11935  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
EYD00_16610  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
EYD00_16620  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
EYD00_16640  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
EYD00_18585  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
EYD00_16615  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
EYD00_01545  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
EYD00_01555  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EYD00_01560  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
EYD00_22905  catalase [KO:K03781] [EC:1.11.1.6]
EYD00_12640  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
EYD00_20675  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EYD00_19535  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EYD00_18220  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
EYD00_06140  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EYD00_05685  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EYD00_01725  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EYD00_01235  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EYD00_06920  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EYD00_08790  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EYD00_13200  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EYD00_10105  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EYD00_04140  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EYD00_05730  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
EYD00_05720  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EYD00_05260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EYD00_11240  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EYD00_05725  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EYD00_24320  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
EYD00_24325  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
EYD00_14540  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
EYD00_21675  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EYD00_20660  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
EYD00_15025  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EYD00_23135  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
EYD00_22765  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
EYD00_22760  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
EYD00_22755  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
EYD00_22750  formate dehydrogenase subunit gamma [KO:K00127]
EYD00_10360  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EYD00_15720  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EYD00_18495  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
agt00010  Glycolysis / Gluconeogenesis
agt00020  Citrate cycle (TCA cycle)
agt00030  Pentose phosphate pathway
agt00053  Ascorbate and aldarate metabolism
agt00071  Fatty acid degradation
agt00230  Purine metabolism
agt00250  Alanine, aspartate and glutamate metabolism
agt00260  Glycine, serine and threonine metabolism
agt00620  Pyruvate metabolism
agt00710  Carbon fixation by Calvin cycle
agt00750  Vitamin B6 metabolism
agt00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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