KEGG   PATHWAY: agt00230
Entry
agt00230                    Pathway                                
Name
Purine metabolism - Agrobacterium sp. 33MFTa1.1
Class
Metabolism; Nucleotide metabolism
Pathway map
agt00230  Purine metabolism
agt00230

Module
agt_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:agt00230]
agt_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:agt00230]
agt_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:agt00230]
agt_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:agt00230]
agt_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:agt00230]
agt_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:agt00230]
agt_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:agt00230]
Other DBs
GO: 0006163 0042278
Organism
Agrobacterium sp. 33MFTa1.1 [GN:agt]
Gene
EYD00_12935  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
EYD00_19665  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
EYD00_09155  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
EYD00_01840  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
EYD00_03690  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
EYD00_01450  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
EYD00_04010  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
EYD00_07555  purL; phosphoribosylformylglycinamidine synthase subunit PurL [KO:K23269] [EC:6.3.5.3]
EYD00_07525  purS; phosphoribosylformylglycinamidine synthase subunit PurS [KO:K23264] [EC:6.3.5.3]
EYD00_07530  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
EYD00_04015  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
EYD00_17215  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
EYD00_17210  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
EYD00_10835  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
EYD00_07520  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
EYD00_07510  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
EYD00_12200  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
EYD00_09245  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
EYD00_17290  LysM peptidoglycan-binding domain-containing protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
EYD00_06560  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
EYD00_12905  purine-nucleoside phosphorylase [KO:K03783] [EC:2.4.2.1]
EYD00_09140  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
EYD00_16730  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
EYD00_01335  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
EYD00_03915  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
EYD00_00015  rdgB; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
EYD00_06705  xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
EYD00_09620  xdhA; xanthine dehydrogenase small subunit [KO:K13481] [EC:1.17.1.4]
EYD00_09625  xdhB; xanthine dehydrogenase molybdopterin binding subunit [KO:K13482] [EC:1.17.1.4]
EYD00_23865  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
EYD00_18325  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
EYD00_17690  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
EYD00_23860  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
EYD00_18330  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
EYD00_17685  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
EYD00_23855  (2Fe-2S)-binding protein [KO:K13483]
EYD00_18335  aldehyde dehydrogenase iron-sulfur subunit [KO:K13483]
EYD00_17680  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K13483]
EYD00_11365  glutamine amidotransferase [KO:K01951] [EC:6.3.5.2]
EYD00_13615  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
EYD00_09650  guaD; guanine deaminase [KO:K01487] [EC:3.5.4.3]
EYD00_03815  guanylate kinase [KO:K00942] [EC:2.7.4.8]
EYD00_12610  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
EYD00_06715  vitamin B12-dependent ribonucleotide reductase [KO:K00525] [EC:1.17.4.1]
EYD00_12615  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
EYD00_06610  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
EYD00_03580  HD family hydrolase [KO:K06952] [EC:3.1.3.89]
EYD00_03460  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
EYD00_04035  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
EYD00_01310  Ppx/GppA family phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
EYD00_10985  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
EYD00_19360  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
EYD00_04060  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
EYD00_10265  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
EYD00_12930  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
EYD00_03350  amn; AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
EYD00_09540  ade; adenine deaminase [KO:K01486] [EC:3.5.4.2]
EYD00_15365  adenine deaminase [KO:K01486] [EC:3.5.4.2]
EYD00_17080  TIGR00282 family metallophosphoesterase [KO:K09769] [EC:3.1.4.16]
EYD00_07885  adenylate kinase [KO:K00939] [EC:2.7.4.3]
EYD00_05790  nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
EYD00_09280  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
EYD00_00350  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
EYD00_02330  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
EYD00_02335  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
EYD00_17850  NAD(P)/FAD-dependent oxidoreductase [KO:K22879] [EC:1.14.13.113]
EYD00_09685  uraH; hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
EYD00_22740  aspartate/glutamate racemase family protein [KO:K16841] [EC:5.1.99.3]
EYD00_14115  aspartate/glutamate racemase family protein [KO:K16841] [EC:5.1.99.3]
EYD00_09710  puuE; allantoinase PuuE [KO:K16842] [EC:3.5.2.5]
EYD00_14690  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
EYD00_09690  ureidoglycolate lyase [KO:K01483] [EC:4.3.2.3]
EYD00_10020  ureC; urease subunit alpha [KO:K01428] [EC:3.5.1.5]
EYD00_10040  urease subunit beta [KO:K01429] [EC:3.5.1.5]
EYD00_10050  urease subunit gamma [KO:K01430] [EC:3.5.1.5]
EYD00_20315  gamma-glutamyltransferase [KO:K22602] [EC:3.5.1.126]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
agt00030  Pentose phosphate pathway
agt00220  Arginine biosynthesis
agt00250  Alanine, aspartate and glutamate metabolism
agt00260  Glycine, serine and threonine metabolism
agt00340  Histidine metabolism
agt00630  Glyoxylate and dicarboxylate metabolism
agt00730  Thiamine metabolism
agt00740  Riboflavin metabolism
agt00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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