KEGG   PATHWAY: ahn00020
Entry
ahn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Atlantibacter hermannii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahn00020  Citrate cycle (TCA cycle)
ahn00020

Module
ahn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ahn00020]
ahn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ahn00020]
ahn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahn00020]
ahn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ahn00020]
ahn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahn00020]
Other DBs
GO: 0006099
Organism
Atlantibacter hermannii [GN:ahn]
Gene
NCTC12129_03494  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC12129_02904  acnA_3; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NCTC12129_00910  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC12129_02174  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCTC12129_03489  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC12129_03488  sucB; dihydrolipoamide succinyltransferase component (E2) [KO:K00658] [EC:2.3.1.61]
NCTC12129_00906  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12129_03486  sucD; succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC12129_03487  sucC; succinyl-CoA synthetase beta chain with ATP-grasp domain [KO:K01903] [EC:6.2.1.5]
NCTC12129_03491  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC12129_03490  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
NCTC12129_03493  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
NCTC12129_03492  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
NCTC12129_04471  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NCTC12129_04472  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NCTC12129_04473  frdC; fumarate reductase subunit C [KO:K00246]
NCTC12129_04474  frdD; fumarate reductase subunit D [KO:K00247]
NCTC12129_02415  fumA; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NCTC12129_02416  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC12129_02335  ydhZ; protein [KO:K01675] [EC:4.2.1.2]
NCTC12129_04123  yggD; putative transcriptional regulator [KO:K01774] [EC:4.2.1.2]
NCTC12129_00544  mdh_1; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC12129_00380  pckA_1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NCTC12129_00903  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC12129_00904  aceF_1; dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
NCTC12129_02847  porA; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahn00010  Glycolysis / Gluconeogenesis
ahn00053  Ascorbate and aldarate metabolism
ahn00061  Fatty acid biosynthesis
ahn00071  Fatty acid degradation
ahn00190  Oxidative phosphorylation
ahn00220  Arginine biosynthesis
ahn00250  Alanine, aspartate and glutamate metabolism
ahn00280  Valine, leucine and isoleucine degradation
ahn00350  Tyrosine metabolism
ahn00470  D-Amino acid metabolism
ahn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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