KEGG   PATHWAY: ahy00020
Entry
ahy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas hydrophila ML09-119
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahy00020  Citrate cycle (TCA cycle)
ahy00020

Module
ahy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ahy00020]
ahy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ahy00020]
ahy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahy00020]
ahy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ahy00020]
ahy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahy00020]
Other DBs
GO: 0006099
Organism
Aeromonas hydrophila ML09-119 [GN:ahy]
Gene
AHML_10385  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AHML_20430  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AHML_07765  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AHML_06140  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AHML_10415  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AHML_10420  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AHML_20460  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AHML_10430  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AHML_10425  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AHML_10405  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AHML_10410  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AHML_10395  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
AHML_10400  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AHML_17190  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AHML_17195  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
AHML_17200  fumarate reductase subunit C [KO:K00246]
AHML_17205  fumarate reductase subunit D [KO:K00247]
AHML_10795  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AHML_17610  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AHML_03385  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AHML_02890  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AHML_20470  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
AHML_20465  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AHML_08315  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AHML_17020  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahy00010  Glycolysis / Gluconeogenesis
ahy00053  Ascorbate and aldarate metabolism
ahy00061  Fatty acid biosynthesis
ahy00071  Fatty acid degradation
ahy00190  Oxidative phosphorylation
ahy00220  Arginine biosynthesis
ahy00250  Alanine, aspartate and glutamate metabolism
ahy00280  Valine, leucine and isoleucine degradation
ahy00350  Tyrosine metabolism
ahy00470  D-Amino acid metabolism
ahy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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