KEGG   PATHWAY: aiu00020
Entry
aiu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alistipes ihumii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aiu00020  Citrate cycle (TCA cycle)
aiu00020

Module
aiu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aiu00020]
aiu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aiu00020]
Other DBs
GO: 0006099
Organism
Alistipes ihumii [GN:aiu]
Gene
NQ491_06665  citrate/2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NQ491_04880  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NQ491_06670  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NQ491_02840  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQ491_09355  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NQ491_02285  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NQ491_09360  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NQ491_02280  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NQ491_02275  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
NQ491_02290  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
NQ491_08240  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NQ491_08245  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NQ491_08235  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
NQ491_00190  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NQ491_07850  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NQ491_09415  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NQ491_00885  carboxylase [KO:K01960] [EC:6.4.1.1]
NQ491_08780  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NQ491_02835  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NQ491_07005  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aiu00010  Glycolysis / Gluconeogenesis
aiu00053  Ascorbate and aldarate metabolism
aiu00061  Fatty acid biosynthesis
aiu00071  Fatty acid degradation
aiu00190  Oxidative phosphorylation
aiu00220  Arginine biosynthesis
aiu00250  Alanine, aspartate and glutamate metabolism
aiu00280  Valine, leucine and isoleucine degradation
aiu00350  Tyrosine metabolism
aiu00470  D-Amino acid metabolism
aiu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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