KEGG   PATHWAY: ajd00020
Entry
ajd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas jandaei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ajd00020  Citrate cycle (TCA cycle)
ajd00020

Module
ajd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ajd00020]
ajd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ajd00020]
ajd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ajd00020]
ajd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ajd00020]
ajd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ajd00020]
Other DBs
GO: 0006099
Organism
Aeromonas jandaei [GN:ajd]
Gene
I6H43_01355  citrate synthase [KO:K01647] [EC:2.3.3.1]
I6H43_12840  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I6H43_18600  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6H43_05465  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
I6H43_01325  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I6H43_01320  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
I6H43_12825  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6H43_01310  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I6H43_01315  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I6H43_01335  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6H43_01330  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6H43_01345  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
I6H43_01340  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
I6H43_16045  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
I6H43_16040  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
I6H43_16035  fumarate reductase subunit C [KO:K00246]
I6H43_16030  frdD; fumarate reductase subunit FrdD [KO:K00247]
I6H43_20955  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I6H43_07665  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6H43_08350  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
I6H43_12815  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
I6H43_12820  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
I6H43_16215  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
I6H43_03490  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ajd00010  Glycolysis / Gluconeogenesis
ajd00053  Ascorbate and aldarate metabolism
ajd00061  Fatty acid biosynthesis
ajd00071  Fatty acid degradation
ajd00190  Oxidative phosphorylation
ajd00220  Arginine biosynthesis
ajd00250  Alanine, aspartate and glutamate metabolism
ajd00280  Valine, leucine and isoleucine degradation
ajd00350  Tyrosine metabolism
ajd00470  D-Amino acid metabolism
ajd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system