KEGG   PATHWAY: alca00020
Entry
alca00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alcanivorax sp. ALC70
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alca00020  Citrate cycle (TCA cycle)
alca00020

Module
alca_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alca00020]
alca_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alca00020]
alca_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alca00020]
alca_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alca00020]
Other DBs
GO: 0006099
Organism
Alcanivorax sp. ALC70 [GN:alca]
Gene
ASALC70_03765  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
ASALC70_04272  gltA_3; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ASALC70_00942  acn_1; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
ASALC70_00237  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ASALC70_04438  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ASALC70_01901  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
ASALC70_04277  sucA_1; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ASALC70_04279  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ASALC70_04281  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ASALC70_04283  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ASALC70_04282  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ASALC70_04275  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ASALC70_03200  sdhB_1; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ASALC70_04276  sdhB_2; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ASALC70_04273  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ASALC70_04274  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
ASALC70_00553  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
ASALC70_02390  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ASALC70_04390  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ASALC70_03049  cfiB_3; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
ASALC70_03047  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
ASALC70_02874  pckA_1; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ASALC70_01113  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ASALC70_01112  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alca00010  Glycolysis / Gluconeogenesis
alca00053  Ascorbate and aldarate metabolism
alca00061  Fatty acid biosynthesis
alca00071  Fatty acid degradation
alca00190  Oxidative phosphorylation
alca00220  Arginine biosynthesis
alca00250  Alanine, aspartate and glutamate metabolism
alca00280  Valine, leucine and isoleucine degradation
alca00350  Tyrosine metabolism
alca00470  D-Amino acid metabolism
alca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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