KEGG   PATHWAY: alg00020
Entry
alg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aquicella lusitana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alg00020  Citrate cycle (TCA cycle)
alg00020

Module
alg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alg00020]
alg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alg00020]
alg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alg00020]
alg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alg00020]
Other DBs
GO: 0006099
Organism
Aquicella lusitana [GN:alg]
Gene
AQULUS_11590  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
AQULUS_01520  dmdA; 2,3-dimethylmalate dehydratase large subunit [KO:K01681] [EC:4.2.1.3]
AQULUS_11780  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AQULUS_04860  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AQULUS_09070  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AQULUS_11540  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AQULUS_11530  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AQULUS_15060  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AQULUS_11510  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AQULUS_11520  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AQULUS_11560  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AQULUS_11550  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AQULUS_11580  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AQULUS_11570  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
AQULUS_09650  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AQULUS_18250  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AQULUS_00300  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
AQULUS_15080  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AQULUS_15070  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alg00010  Glycolysis / Gluconeogenesis
alg00053  Ascorbate and aldarate metabolism
alg00061  Fatty acid biosynthesis
alg00071  Fatty acid degradation
alg00190  Oxidative phosphorylation
alg00220  Arginine biosynthesis
alg00250  Alanine, aspartate and glutamate metabolism
alg00280  Valine, leucine and isoleucine degradation
alg00350  Tyrosine metabolism
alg00470  D-Amino acid metabolism
alg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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