KEGG   PATHWAY: alim03030
Entry
alim03030                   Pathway                                
Name
DNA replication - Austrofundulus limnaeus (annual killifish)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
alim03030  DNA replication
alim03030

Organism
Austrofundulus limnaeus (annual killifish) [GN:alim]
Gene
106524440  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
106527681  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
106531777  ribonuclease H-like [KO:K03469] [EC:3.1.26.4]
106523505  replication protein A 70 kDa DNA-binding subunit-like isoform X1 [KO:K07466]
106533213  replication protein A 70 kDa DNA-binding subunit-like [KO:K07466]
106513645  pcna; proliferating cell nuclear antigen [KO:K04802]
106513157  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
106536586  probable flap endonuclease 1 homolog [KO:K04799] [EC:3.1.-.-]
106530843  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
106520801  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
106524796  pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
106516076  pola2; DNA polymerase alpha subunit B [KO:K02321]
106516766  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
106519718  prim2; LOW QUALITY PROTEIN: DNA primase large subunit [KO:K02685]
106528143  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
106516719  pold2; DNA polymerase delta subunit 2 [KO:K02328]
106522896  pold3; DNA polymerase delta subunit 3 [KO:K03504]
106532933  pold4; DNA polymerase delta subunit 4 [KO:K03505]
106521710  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
106526350  pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
106534195  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
106521575  pole4; DNA polymerase epsilon subunit 4 isoform X1 [KO:K03506] [EC:2.7.7.7]
106522358  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
106531427  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
106533671  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
106517870  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
106517936  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
106525378  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
106526604  rpa2; replication protein A 32 kDa subunit [KO:K10739]
106525112  rpa3; replication protein A 14 kDa subunit [KO:K10740]
106535449  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
106533144  rfc2; replication factor C subunit 2 [KO:K10755]
106517289  rfc4; replication factor C subunit 4 [KO:K10755]
106514171  rfc3; replication factor C subunit 3 [KO:K10756]
106519453  rfc5; replication factor C subunit 5 [KO:K10756]
106515249  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
106519858  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
106515890  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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