KEGG   PATHWAY: alr00020
Entry
alr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas sp. RKMC-009
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
alr00020  Citrate cycle (TCA cycle)
alr00020

Module
alr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:alr00020]
alr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:alr00020]
alr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:alr00020]
alr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:alr00020]
alr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:alr00020]
Other DBs
GO: 0006099
Organism
Alteromonas sp. RKMC-009 [GN:alr]
Gene
DS731_10410  citrate synthase [KO:K01647] [EC:2.3.3.1]
DS731_19285  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DS731_08400  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DS731_04180  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DS731_09485  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DS731_06015  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
DS731_10435  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DS731_10440  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DS731_15445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DS731_10450  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DS731_10445  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DS731_16830  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
DS731_10425  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DS731_10430  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DS731_16490  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DS731_10415  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DS731_16485  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DS731_10420  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DS731_10760  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DS731_01365  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DS731_17885  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DS731_19230  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DS731_20835  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DS731_15455  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DS731_15450  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
alr00010  Glycolysis / Gluconeogenesis
alr00053  Ascorbate and aldarate metabolism
alr00061  Fatty acid biosynthesis
alr00071  Fatty acid degradation
alr00190  Oxidative phosphorylation
alr00220  Arginine biosynthesis
alr00250  Alanine, aspartate and glutamate metabolism
alr00280  Valine, leucine and isoleucine degradation
alr00350  Tyrosine metabolism
alr00470  D-Amino acid metabolism
alr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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