KEGG   PATHWAY: amai00020
Entry
amai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas mediterranea UM7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amai00020  Citrate cycle (TCA cycle)
amai00020

Module
amai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amai00020]
amai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amai00020]
amai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amai00020]
amai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amai00020]
amai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amai00020]
Other DBs
GO: 0006099
Organism
Alteromonas mediterranea UM7 [GN:amai]
Gene
I635_10270  citrate synthase [KO:K01647] [EC:2.3.3.1]
I635_01995  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
I635_03600  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I635_03620  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I635_09630  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I635_04710  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
I635_10295  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I635_10300  dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
I635_05965  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I635_14950  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I635_10310  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
I635_10305  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
I635_10285  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I635_10290  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
I635_10275  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
I635_10280  succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC [KO:K00242]
I635_10615  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I635_15815  fumarase [KO:K01679] [EC:4.2.1.2]
I635_17370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I635_19510  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
I635_14960  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
I635_14955  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amai00010  Glycolysis / Gluconeogenesis
amai00053  Ascorbate and aldarate metabolism
amai00061  Fatty acid biosynthesis
amai00071  Fatty acid degradation
amai00190  Oxidative phosphorylation
amai00220  Arginine biosynthesis
amai00250  Alanine, aspartate and glutamate metabolism
amai00280  Valine, leucine and isoleucine degradation
amai00350  Tyrosine metabolism
amai00470  D-Amino acid metabolism
amai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system