KEGG   PATHWAY: amao00020
Entry
amao00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas mediterranea U8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amao00020  Citrate cycle (TCA cycle)
amao00020

Module
amao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amao00020]
amao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amao00020]
amao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amao00020]
amao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amao00020]
amao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amao00020]
Other DBs
GO: 0006099
Organism
Alteromonas mediterranea U8 [GN:amao]
Gene
I634_09560  citrate synthase [KO:K01647] [EC:2.3.3.1]
I634_02205  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
I634_03910  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I634_08900  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I634_04890  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
I634_09585  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I634_09590  dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
I634_14520  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I634_09600  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
I634_09595  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
I634_09575  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I634_09580  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
I634_09565  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
I634_09570  succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC [KO:K00242]
I634_10020  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I634_15380  fumarase [KO:K01679] [EC:4.2.1.2]
I634_16695  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I634_18615  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
I634_14530  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
I634_14525  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amao00010  Glycolysis / Gluconeogenesis
amao00053  Ascorbate and aldarate metabolism
amao00061  Fatty acid biosynthesis
amao00071  Fatty acid degradation
amao00190  Oxidative phosphorylation
amao00220  Arginine biosynthesis
amao00250  Alanine, aspartate and glutamate metabolism
amao00280  Valine, leucine and isoleucine degradation
amao00350  Tyrosine metabolism
amao00470  D-Amino acid metabolism
amao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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