KEGG   PATHWAY: amed00020
Entry
amed00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas media
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amed00020  Citrate cycle (TCA cycle)
amed00020

Module
amed_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amed00020]
amed_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amed00020]
amed_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amed00020]
amed_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amed00020]
amed_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amed00020]
Other DBs
GO: 0006099
Organism
Aeromonas media [GN:amed]
Gene
B224_2705  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
B224_0132  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B224_1276  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B224_4096  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
B224_2698  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B224_2695  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B224_0125  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
B224_2691  succinyl-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
B224_2693  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
B224_2700  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B224_2699  succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
B224_2703  succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
B224_2702  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B224_0930  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
B224_0932  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
B224_0933  fumarate reductase, 15 kDa hydrophobic protein [KO:K00246]
B224_0934  fumarate reductase, 13 kDa hydrophobic protein [KO:K00247]
B224_2048  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
B224_4270  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
B224_4585  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B224_0266  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
B224_0121  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
B224_0122  pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
B224_3690  ferredoxin oxidoreductase and-related 2-oxoacid:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amed00010  Glycolysis / Gluconeogenesis
amed00053  Ascorbate and aldarate metabolism
amed00061  Fatty acid biosynthesis
amed00071  Fatty acid degradation
amed00190  Oxidative phosphorylation
amed00220  Arginine biosynthesis
amed00250  Alanine, aspartate and glutamate metabolism
amed00280  Valine, leucine and isoleucine degradation
amed00350  Tyrosine metabolism
amed00470  D-Amino acid metabolism
amed00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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