KEGG   PATHWAY: amh00020
Entry
amh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas mediterranea 615
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amh00020  Citrate cycle (TCA cycle)
amh00020

Module
amh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amh00020]
amh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amh00020]
Other DBs
GO: 0006099
Organism
Alteromonas mediterranea 615 [GN:amh]
Gene
I633_10230  citrate synthase [KO:K01647] [EC:2.3.3.1]
I633_01930  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
I633_03675  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I633_03695  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I633_04860  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
I633_10255  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I633_10260  dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
I633_15470  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I633_10275  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
I633_10245  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I633_10250  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
I633_10235  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
I633_10240  succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC [KO:K00242]
I633_10675  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I633_16395  fumarase [KO:K01679] [EC:4.2.1.2]
I633_17895  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I633_15480  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
I633_15475  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amh00010  Glycolysis / Gluconeogenesis
amh00053  Ascorbate and aldarate metabolism
amh00061  Fatty acid biosynthesis
amh00071  Fatty acid degradation
amh00190  Oxidative phosphorylation
amh00220  Arginine biosynthesis
amh00250  Alanine, aspartate and glutamate metabolism
amh00280  Valine, leucine and isoleucine degradation
amh00350  Tyrosine metabolism
amh00470  D-Amino acid metabolism
amh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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