KEGG   PATHWAY: amis00020
Entry
amis00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aminobacter sp. SS-2016
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amis00020  Citrate cycle (TCA cycle)
amis00020

Module
amis_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amis00020]
amis_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amis00020]
amis_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amis00020]
amis_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amis00020]
amis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amis00020]
Other DBs
GO: 0006099
Organism
Aminobacter sp. SS-2016 [GN:amis]
Gene
Amn_26410  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Amn_38560  citrate synthase [KO:K01647] [EC:2.3.3.1]
Amn_38570  citrate synthase [KO:K01647] [EC:2.3.3.1]
Amn_52620  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Amn_25300  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Amn_52570  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
Amn_52560  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Amn_26660  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Amn_38150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Amn_46680  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Amn_52500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Amn_pb00710  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Amn_pa03770  2-ketoisovalerate ferredoxin reductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Amn_pa03760  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Amn_pa03790  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
Amn_pa03780  ferredoxin [KO:K00176] [EC:1.2.7.3]
Amn_52580  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Amn_52590  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Amn_52250  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Amn_52220  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Amn_52270  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Amn_52260  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Amn_11530  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Amn_22070  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Amn_52600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Amn_50110  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Amn_00310  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Amn_pb00690  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
Amn_26610  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
Amn_26620  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Amn_26630  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Amn_pb00700  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amis00010  Glycolysis / Gluconeogenesis
amis00053  Ascorbate and aldarate metabolism
amis00061  Fatty acid biosynthesis
amis00071  Fatty acid degradation
amis00190  Oxidative phosphorylation
amis00220  Arginine biosynthesis
amis00250  Alanine, aspartate and glutamate metabolism
amis00280  Valine, leucine and isoleucine degradation
amis00350  Tyrosine metabolism
amis00470  D-Amino acid metabolism
amis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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