KEGG   PATHWAY: amj00020
Entry
amj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alligator mississippiensis (American alligator)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amj00020  Citrate cycle (TCA cycle)
amj00020

Module
amj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amj00020]
amj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amj00020]
amj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amj00020]
amj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amj00020]
amj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amj00020]
Other DBs
GO: 0006099
Organism
Alligator mississippiensis (American alligator) [GN:amj]
Gene
102575304  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
102572777  ACLY; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
102577199  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
102565739  ACO1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
102568032  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
106737218  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
102572722  IDH3G; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
106737711  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
102572950  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
106736742  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
102567701  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
102567229  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
102568552  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
102569975  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102558576  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102560612  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102561508  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
102575823  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
102574235  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
102571129  SDHD; succinate dehydrogenase complex subunit D [KO:K00237]
102561277  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
102566997  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
102569347  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
102576074  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
102568503  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
106737103  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
102572629  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
102564029  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
102570668  DLAT; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amj00010  Glycolysis / Gluconeogenesis
amj00053  Ascorbate and aldarate metabolism
amj00061  Fatty acid biosynthesis
amj00062  Fatty acid elongation
amj00071  Fatty acid degradation
amj00190  Oxidative phosphorylation
amj00220  Arginine biosynthesis
amj00250  Alanine, aspartate and glutamate metabolism
amj00280  Valine, leucine and isoleucine degradation
amj00350  Tyrosine metabolism
amj00470  D-Amino acid metabolism
amj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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