KEGG   PATHWAY: amon00020
Entry
amon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenacidovorax monticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amon00020  Citrate cycle (TCA cycle)
amon00020

Module
amon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amon00020]
amon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amon00020]
amon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amon00020]
amon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amon00020]
Other DBs
GO: 0006099
Organism
Paenacidovorax monticola [GN:amon]
Gene
H9L24_07300  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
H9L24_08635  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
H9L24_16325  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
H9L24_20975  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H9L24_08540  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
H9L24_05365  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H9L24_05380  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H9L24_03615  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H9L24_03620  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H9L24_03625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9L24_05140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H9L24_16715  PGL/p-HBAD biosynthesis glycosyltransferase [KO:K01902] [EC:6.2.1.5]
H9L24_16720  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H9L24_15235  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
H9L24_08580  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H9L24_08585  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H9L24_08570  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
H9L24_08575  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
H9L24_00515  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
H9L24_00520  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H9L24_08560  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H9L24_15055  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
H9L24_08155  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
H9L24_05150  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H9L24_05145  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amon00010  Glycolysis / Gluconeogenesis
amon00053  Ascorbate and aldarate metabolism
amon00061  Fatty acid biosynthesis
amon00071  Fatty acid degradation
amon00190  Oxidative phosphorylation
amon00220  Arginine biosynthesis
amon00250  Alanine, aspartate and glutamate metabolism
amon00280  Valine, leucine and isoleucine degradation
amon00350  Tyrosine metabolism
amon00470  D-Amino acid metabolism
amon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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