KEGG   PATHWAY: amyt00020
Entry
amyt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Malaciobacter mytili
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amyt00020  Citrate cycle (TCA cycle)
amyt00020

Module
amyt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amyt00020]
amyt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amyt00020]
amyt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amyt00020]
Other DBs
GO: 0006099
Organism
Malaciobacter mytili [GN:amyt]
Gene
AMYT_2338  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AMYT_2383  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AMYT_1208  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMYT_1697  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
AMYT_1800  lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMYT_1868  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AMYT_1869  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AMYT_1870  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
AMYT_1867  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
AMYT_2363  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AMYT_2362  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AMYT_2524  frdA2; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AMYT_2348  frdA1; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AMYT_2523  frdB2; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AMYT_2349  frdB1; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AMYT_2525  frdC2; fumarate reductase, cytochrome b subunit [KO:K25996]
AMYT_2347  frdC1; fumarate reductase, cytochrome b subunit [KO:K25996]
AMYT_1369  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AMYT_1367  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AMYT_1805  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AMYT_0622  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
AMYT_1164  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
AMYT_1454  oadA; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
AMYT_1452  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AMYT_1802  aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AMYT_1801  aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase [KO:K00627] [EC:2.3.1.12]
AMYT_0185  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
AMYT_0184  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
AMYT_0186  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
AMYT_0892  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amyt00010  Glycolysis / Gluconeogenesis
amyt00053  Ascorbate and aldarate metabolism
amyt00061  Fatty acid biosynthesis
amyt00071  Fatty acid degradation
amyt00190  Oxidative phosphorylation
amyt00220  Arginine biosynthesis
amyt00250  Alanine, aspartate and glutamate metabolism
amyt00280  Valine, leucine and isoleucine degradation
amyt00350  Tyrosine metabolism
amyt00470  D-Amino acid metabolism
amyt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system