KEGG   PATHWAY: ans00020
Entry
ans00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arsenophonus nasoniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ans00020  Citrate cycle (TCA cycle)
ans00020

Module
ans_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ans00020]
ans_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ans00020]
ans_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ans00020]
ans_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ans00020]
ans_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ans00020]
Other DBs
GO: 0006099
Organism
Arsenophonus nasoniae [GN:ans]
Gene
ArsFIN_12170  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ArsFIN_19700  acnA; Aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ArsFIN_31890  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ArsFIN_24470  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ArsFIN_12220  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ArsFIN_12230  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ArsFIN_31900  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ArsFIN_12250  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ArsFIN_12240  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ArsFIN_12200  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ArsFIN_12210  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ArsFIN_12180  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ArsFIN_12190  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
ArsFIN_39740  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ArsFIN_19500  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ArsFIN_03740  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ArsFIN_40260  mqo_2; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ArsFIN_06690  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
ArsFIN_31920  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ArsFIN_31910  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ArsFIN_28330  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ans00010  Glycolysis / Gluconeogenesis
ans00053  Ascorbate and aldarate metabolism
ans00061  Fatty acid biosynthesis
ans00071  Fatty acid degradation
ans00190  Oxidative phosphorylation
ans00220  Arginine biosynthesis
ans00250  Alanine, aspartate and glutamate metabolism
ans00280  Valine, leucine and isoleucine degradation
ans00350  Tyrosine metabolism
ans00470  D-Amino acid metabolism
ans00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system